Hyperspectral Remote Sensing Analysis Training Course

Duration 10 days 19 modules · 65 contact hours
Level Intermediate Certificate on completion
Who attends Remote Sensing Analysts, GIS Analysts and others
Fee from USD 2,200 KSh 190,000 for Kenyan organisations
Where 52 cities + online See dates by city
Next start 16 Nov 2026 Course code SD-GRS-139

Before you join: Participants should be comfortable working with GIS layers, raster imagery and tabular attribute data.

Dates & prices

Two start dates a month in every city, and live online on weekdays or weekends. Fees are per participant; classroom fees include tuition, materials, lunch and refreshments, and the certificate.

Suggest a date or city

Showing the next six months. Later dates, other cities and private deliveries for your team are available on request.

Course overview

Hyperspectral imagery can distinguish materials that appear identical in multispectral data, but its hundreds of narrow bands create difficult analytical choices. Analysts must separate meaningful spectral information from noise, atmospheric effects, redundant bands and mixed pixels before producing classifications or target maps that decision-makers can trust. Poor preprocessing or an unsuitable dimensionality-reduction method can create convincing but inaccurate results for mineral exploration, crop stress assessment, contamination mapping, coastal monitoring or infrastructure inspection.

This course develops the workflow required to analyse hyperspectral imagery from source data to validated outputs. Participants work with spectral libraries, reflectance products, image masks, dimensionality-reduction methods and feature-extraction techniques. Coverage includes principal component analysis, minimum noise fraction, independent component analysis, kernel methods, band selection, spectral indices, continuum removal, derivative spectra and endmember extraction. Participants compare supervised and unsupervised methods, select informative features, assess separability, build classification-ready feature sets and document analytical decisions.

Teaching combines concise technical briefings with guided analysis of representative hyperspectral scenes from agriculture, mining, environmental monitoring and urban asset management. Participants use ENVI, QGIS and Python-based workflows to prepare data, inspect spectra, generate transformed components and evaluate results against reference data. They leave with a documented hyperspectral analysis workflow, including preprocessing decisions, feature-selection rationale, validation results and a presentation-ready map product. The course is delivered over 10 days, from 08:30 to 16:30, in classrooms in more than 50 cities or live online, and includes a certificate of completion.

The course suits GIS and remote-sensing professionals who already work with raster data and need a disciplined approach to high-dimensional imagery. It is particularly relevant where material identification, condition assessment or early anomaly detection affects operational decisions.

What you will be able to do

  • Prepare hyperspectral imagery using calibrated reflectance, masks and quality-control checks
  • Diagnose noise, redundancy and atmospheric artefacts using spectral and statistical evidence
  • Apply PCA, MNF and ICA to create interpretable reduced-dimensionality datasets
  • Select informative bands and derived features using separability and feature-ranking methods
  • Extract endmembers and spectral features for material identification and classification
  • Build classification-ready hyperspectral feature stacks for supervised and unsupervised analysis
  • Validate feature-extraction outputs using reference samples, accuracy measures and error analysis
  • Present a documented hyperspectral analysis product with defensible technical recommendations

Benefits of attending

For you

  • Produce defensible hyperspectral feature sets for mapping and modelling assignments
  • Explain PCA, MNF and endmember outputs clearly to technical stakeholders
  • Reduce trial-and-error when selecting bands, transforms and classification inputs
  • Diagnose common hyperspectral artefacts before they distort downstream results
  • Build a documented portfolio example using real hyperspectral analysis outputs

For your organisation

  • Improves consistency of preprocessing and feature-selection decisions across projects
  • Reduces false detections caused by noisy, redundant or poorly corrected bands
  • Supports earlier identification of crop stress, mineral alteration and environmental anomalies
  • Produces auditable analysis records for client reports, procurement and regulatory review
  • Expands internal capacity to use costly hyperspectral acquisitions effectively

Course modules

19 modules over 10 days

Participants can define a defensible workflow for a hyperspectral analysis assignment.

  • Hyperspectral cubes, spectral signatures and high-dimensional data structures
  • Electromagnetic interactions governing vegetation, minerals, water and built materials
  • Sensor types: airborne, satellite, laboratory and field spectrometer systems
  • Spatial, spectral, radiometric and temporal resolution trade-offs
  • Analysis chain from acquisition planning through validated map delivery
  • Use cases for anomaly detection, material mapping and condition assessment

Participants can inspect reflectance data and identify quality issues requiring correction or masking.

  • Reflectance curves, absorption features and diagnostic spectral regions
  • Radiance-to-reflectance conversion and reflectance product selection
  • Signal-to-noise ratio assessed across wavelengths and image locations
  • Identify dead pixels, striping, saturation and dropped spectral bands
  • Water-vapour absorption regions removed before analytical processing
  • Metadata review covering acquisition geometry, calibration and processing history

Participants can organise hyperspectral data and spatial references for reproducible analysis.

  • ENVI, GeoTIFF and HDF formats with associated metadata
  • Coordinate reference systems checked against field and vector reference data
  • Subset scenes using areas of interest and analysis masks
  • Raster alignment verified before combining hyperspectral and ancillary layers
  • Create project folders, naming conventions and processing provenance records
  • GDAL inspection commands for dimensions, bands, projections and no-data values

Participants can select and evaluate correction approaches appropriate to source imagery.

  • Atmospheric scattering, absorption and adjacency effects in hyperspectral scenes
  • FLAASH and QUAC assumptions, inputs and output interpretation
  • Empirical line correction using field targets and reflectance references
  • Topographic illumination effects assessed using slope, aspect and solar geometry
  • Compare corrected spectra against library signatures and field observations
  • Document correction parameters, exclusions and residual quality concerns

Participants can quantify noise sources and apply appropriate signal-enhancement treatments.

  • Random noise, structured noise and spectral smile characteristics
  • Dark-current effects and detector-specific artefacts identified from imagery
  • Savitzky-Golay smoothing with window-size and polynomial-order selection
  • Median filters and spatial smoothing without excessive boundary loss
  • Noise-equivalent delta reflectance interpreted for sensor performance assessment
  • Compare denoised spectra while retaining narrow diagnostic absorption features

Participants can transform spectra to reveal material-specific features and reduce nuisance variation.

  • Continuum removal isolates absorption depth, position and feature width
  • First and second derivatives highlight subtle spectral absorption changes
  • Vector normalization reduces brightness variation between comparable spectra
  • Standard normal variate correction addresses multiplicative scatter effects
  • Band ratios and normalized difference indices target material responses
  • Transformation choice matched to physical question and sensor characteristics

Participants can investigate spectral variability and identify candidate discriminating features.

  • Spectral plots compare targets, backgrounds and reference library records
  • Mean, variance and coefficient-of-variation profiles reveal unstable bands
  • Spectral angle mapper measures directional similarity between spectra
  • Euclidean distance and correlation quantify alternative spectral relationships
  • Boxplots expose outliers within labelled training and validation samples
  • Scatterplots examine band-pair separation before feature engineering decisions

Participants can apply and interpret PCA for spectral redundancy reduction.

  • Covariance and correlation matrices as PCA input choices
  • Mean centring and scaling decisions before component extraction
  • Eigenvalues, eigenvectors and explained variance interpreted correctly
  • Scree plots determine retained components using stated selection criteria
  • Component loadings identify influential wavelengths and spectral regions
  • PCA score images inspected for materials, gradients and artefacts

Participants can use MNF to separate signal-bearing components from noise-dominated components.

  • MNF transformation combines noise whitening with principal component rotation
  • Noise covariance estimated from local differences and homogeneous areas
  • Eigenvalue ordering distinguishes coherent information from residual noise
  • MNF component images reviewed for spatial structure and striping
  • Retained MNF bands selected using eigenvalues, imagery and spectra
  • Inverse MNF transformation reconstructs denoised hyperspectral image products

Participants can assess nonlinear and statistically independent transformations for complex scenes.

  • Independent component analysis separates non-Gaussian source signals statistically
  • FastICA assumptions, convergence behaviour and component interpretation
  • Kernel PCA captures nonlinear spectral relationships using kernel functions
  • Radial basis and polynomial kernels compared through validation results
  • Parameter tuning controls component stability, separation and overfitting risk
  • Choose PCA, MNF, ICA or kernel PCA by analytical objective

Participants can select compact informative band sets using quantitative ranking criteria.

  • Filter methods rank bands using variance, correlation and mutual information
  • Sequential forward selection builds compact predictive feature subsets
  • Recursive feature elimination removes weak variables from supervised models
  • Jeffries-Matusita distance quantifies class separability between reference samples
  • Transformed divergence identifies discriminating bands for material classes
  • Redundant bands removed using correlation thresholds and physical interpretation

Participants can prepare spectral references and define endmember strategies for target materials.

  • USGS spectral library records matched to sensor wavelength sampling
  • Resampling library spectra using sensor response functions
  • Field spectra cleaned for illumination variation and calibration drift
  • Pure pixels, endmembers and mixed pixels defined for image analysis
  • Target and background signatures selected from imagery and field evidence
  • Library metadata records material composition, measurement conditions and confidence

Participants can extract endmembers and estimate material fractions in mixed pixels.

  • Pixel purity index identifies spectrally extreme candidate endmembers
  • N-FINDR extracts simplex vertices representing pure spectral sources
  • Vertex component analysis estimates endmembers from mixed hyperspectral pixels
  • Linear spectral unmixing estimates fractional abundances under mixing assumptions
  • Fully constrained least squares enforces nonnegative fractions summing to one
  • Residual images reveal missing endmembers and model mismatch patterns

Participants can construct traceable feature stacks suited to classification and detection tasks.

  • Combine selected bands, components, indices and texture measures
  • Gray-level co-occurrence metrics describe local spatial texture patterns
  • Feature scaling applied consistently between training and production data
  • Masks exclude shadows, clouds, water and irrelevant land-cover areas
  • Training samples linked to feature tables and spatial reference geometry
  • Feature-stack documentation records source bands, transforms and parameter values

Participants can compare supervised classifiers using reduced hyperspectral feature sets.

  • Support vector machines classify high-dimensional features with margin optimization
  • Random forests rank variables and handle nonlinear class boundaries
  • Gaussian maximum likelihood classification requires class distribution assumptions
  • Training sample design addresses representativeness, balance and spatial autocorrelation
  • Cross-validation estimates model performance before map production
  • Confusion matrices compare classifier errors by target material class

Participants can identify spectral groupings and anomalous targets without complete labels.

  • K-means clustering partitions spectra using centroid-based similarity
  • ISODATA clustering adjusts cluster membership, merging and splitting iteratively
  • Hierarchical clustering reveals spectral group relationships at multiple scales
  • Reed-Xiaoli detector identifies statistically unusual spectral pixels
  • Matched filtering detects known target signatures against variable backgrounds
  • Cluster interpretation combines spectra, spatial context and field knowledge

Participants can validate hyperspectral outputs and communicate confidence, limitations and fitness for use.

  • Independent validation samples separated from model-development reference data
  • Overall accuracy, producer accuracy and user accuracy reported correctly
  • F1 score and balanced accuracy address imbalanced target classes
  • Spatially blocked validation reduces optimistic estimates from nearby samples
  • Uncertainty maps communicate low-confidence predictions and ambiguous materials
  • Technical reports record assumptions, methods, limitations and reproducibility information

Participants can plan repeatable hyperspectral processing for operational monitoring work.

  • Standard operating procedures define inputs, parameters, outputs and acceptance criteria
  • Version control tracks scripts, models, training data and processing changes
  • Quality assurance checks verify projections, masks, ranges and output completeness
  • Batch processing designs support repeated scenes and consistent feature generation
  • Decision thresholds linked to field inspection, escalation and reporting actions
  • Data governance addresses licensing, retention, access controls and provenance

Participants can build, review and present a complete hyperspectral feature-extraction analysis for a defined mapping objective.

  • Define the mapping objective, target classes and acceptance criteria
  • Prepare reflectance imagery, masks and documented quality-control evidence
  • Select transformations, reduced components and discriminating spectral features
  • Build a feature stack with endmembers or labelled reference samples
  • Validate outputs using independent data, error metrics and uncertainty evidence
  • Present maps, workflow rationale, limitations and operational recommendations

Exercises and examples are adapted to each cohort's sectors and roles.

What you take back to work

  1. Hyperspectral preprocessing checklist
  2. Dimensionality-reduction method selection matrix
  3. Spectral feature-engineering template
  4. Band-selection and separability analysis workbook
  5. Endmember extraction and unmixing workflow
  6. Validated capstone analysis report and map portfolio

Who should attend

  • Remote Sensing Analysts — need reliable methods for extracting material and condition information
  • GIS Analysts — need to integrate hyperspectral products into spatial decision workflows
  • Environmental Scientists — need defensible vegetation, water and contamination indicators
  • Mining Geologists — need spectral methods for mineral mapping and alteration analysis
  • Agriculture Specialists — need crop-condition features beyond standard multispectral indices
  • Data Scientists — need structured approaches to high-dimensional geospatial feature engineering

Skills and tools covered

Hyperspectral preprocessingDimensionality reductionSpectral feature extractionEndmember analysisFeature selectionAccuracy assessment

Tools and standards

ENVI, QGIS, GDAL, scikit-learn

How the course runs

Training methodology

The course uses short instructor briefings followed by guided work with hyperspectral scenes and spectral reference data. Participants inspect spectra, test alternative transforms, compare outputs and discuss analytical trade-offs in small groups. Cases draw on agriculture, geology, environmental monitoring and urban materials mapping. Simulations address choices such as noisy-band removal, feature ranking and validation design. Each participant develops an application plan and receives structured feedback on preprocessing, feature extraction, interpretation and reporting decisions.

Requirements and prerequisites

Participants should be comfortable working with GIS layers, raster imagery and tabular attribute data. Prior experience opening, displaying and clipping raster datasets in QGIS, ArcGIS or similar software is expected. Familiarity with basic remote-sensing concepts such as pixels, spatial resolution, spectral bands and reflectance is useful. Participants should be able to interpret simple charts and summary statistics. Programming experience is not required; Python examples are explained step by step. Prior use of hyperspectral sensors, ENVI, machine learning libraries, spectroscopy or advanced linear algebra is not required.

A typical training day

08:30 – 10:30First session
10:30 – 10:45Refreshment break
10:45 – 12:30Second session
12:30 – 13:30Lunch and networking
13:30 – 15:00Third session
15:00 – 15:15Refreshment break
15:15 – 16:30Workshop and daily review

Live online deliveries follow the same structure in East Africa Time, with shorter screen blocks and longer breaks.

What the fee includes

  • Instruction by a practitioner facilitator
  • Full course workbook and materials
  • Exercise files, templates and case studies
  • Refreshments and lunch on classroom deliveries
  • Certificate of completion
  • Post-course application plan

Frequently asked questions

You should be able to work with raster data in a GIS and understand basic concepts such as pixels, bands and reflectance. You do not need prior hyperspectral, ENVI, Python or machine-learning experience.

Bring a laptop capable of running desktop GIS and image-analysis software, plus a power adapter. Course datasets and software setup guidance are provided before the course; you may also bring a non-sensitive work dataset for discussion.

It is designed for GIS analysts, remote-sensing analysts, environmental specialists, geologists, agriculture specialists and data professionals. It is most useful for people moving from multispectral work to high-dimensional hyperspectral analysis.

General courses focus on image interpretation, mapping or standard multispectral workflows. This course concentrates on the specific analytical problems of hyperspectral data: noise, redundant bands, spectral transformations, dimensionality reduction, endmembers and feature selection.

You can use the workflow to prepare feature sets for crop stress mapping, mineral targeting, contamination studies, water monitoring, material identification and anomaly detection. The reporting and validation methods also support technical review of supplier or consultant outputs.

The first part establishes data preparation, spectral inspection, correction and initial feature creation. The later modules focus on advanced reduction methods, endmember analysis, classification inputs, validation, operational quality assurance and a complete capstone analysis.

Questions about this course?

Ask about dates, fees, group bookings or running it for your team. Our training team replies by email.