GIS Analytics for Public Health Training Course

Duration 10 days 20 modules · 65 contact hours
Level Intermediate Certificate on completion
Who attends Public Health Analyst, Epidemiologist and others
Fee from USD 2,200 KSh 190,000 for Kenyan organisations
Where 52 cities + online See dates by city
Next start 16 Nov 2026 Course code SD-PH-053

Before you join: Participants should understand basic public-health concepts such as cases, populations at risk, incidence, prevalence and routine surveillance data.

Dates & prices

Two start dates a month in every city, and live online on weekdays or weekends. Fees are per participant; classroom fees include tuition, materials, lunch and refreshments, and the certificate.

Suggest a date or city

Showing the next six months. Later dates, other cities and private deliveries for your team are available on request.

Course overview

Public-health teams need to turn case reports, laboratory results, service locations, population data and community indicators into defensible geographic decisions. During outbreaks and other health emergencies, weak geocoding, inconsistent denominators, poorly chosen map classifications and untested hotspot methods can misdirect field teams and obscure inequities. GIS analytics helps surveillance units identify where transmission is concentrated, which populations face barriers to care, and where interventions should be placed.

This intermediate course develops the analytical methods used for outbreak monitoring, pandemic response, routine surveillance and health-service planning. Participants prepare geospatial health datasets, geocode and validate records, calculate incidence and mortality rates, standardise rates, build thematic maps, assess clustering, model travel-time access and combine epidemiological data with vulnerability indicators. The course also addresses data governance, disclosure control, uncertainty communication and operational reporting for incident-management teams.

Teaching combines instructor briefings, worked public-health cases, supervised GIS analysis, group interpretation sessions and response-planning discussions. Cases reflect common assignments in ministries of health, hospitals, humanitarian agencies and local public-health authorities, including respiratory outbreaks, vaccination coverage gaps, maternal-health access and disease-surveillance reporting. Participants build analytical outputs from the first week and refine them through increasingly demanding scenarios. They leave with a reusable public-health GIS analysis pack, including a data specification, rate-calculation workbook, map-production checklist, hotspot interpretation guide and response dashboard design.

The course suits professionals who already work with health, population or service-delivery data and need stronger spatial-analysis capability. It is delivered instructor-led over 10 days, in classrooms across 50+ cities or live online, and includes a certificate of completion.

What you will be able to do

  • Prepare geocoded surveillance datasets using documented cleaning, validation and linkage procedures
  • Calculate crude, age-specific and directly standardised disease rates for mapped comparison
  • Produce operational choropleth, proportional-symbol and service-access maps using appropriate classification methods
  • Apply spatial autocorrelation and cluster-detection methods to investigate disease concentration
  • Assess travel-time access to health services using network and catchment analysis
  • Integrate vulnerability, demographic and epidemiological indicators into priority-area analyses
  • Design privacy-aware GIS outputs using disclosure-control and data-governance procedures
  • Present a complete outbreak GIS analysis with findings, limitations and response recommendations

Benefits of attending

For you

  • Produce outbreak maps that support field deployment and incident briefings
  • Interpret hotspot results without overstating statistical evidence
  • Build service-access analyses for vaccination and referral planning
  • Apply privacy controls before sharing health maps and dashboards
  • Present spatial findings with clear epidemiological limitations

For your organisation

  • Improve geographic targeting of surveillance, testing, vaccination and outreach resources
  • Reduce reporting errors through repeatable geocoding and data-validation procedures
  • Strengthen evidence for outbreak coordination meetings and operational decisions
  • Identify underserved populations through travel-time and vulnerability analysis
  • Create consistent privacy-aware map products for internal and external reporting

Course modules

20 modules over 10 days

Participants can frame a public-health GIS assignment around a specific decision, population and reporting need.

  • Public health surveillance questions translated into spatial decision requirements
  • Case definitions, line lists, denominators and geographic reporting units
  • Incident objectives structured through the Incident Command System
  • Temporal, geographic and population scales selected for outbreak analysis
  • Data dictionaries documenting variables, codes, sources and update frequency
  • Minimum viable map products specified for operational briefings

Participants can structure surveillance, facility and population datasets for reliable spatial analysis.

  • Point, polygon, raster and network data models for health questions
  • Relational tables linked through stable geographic and facility identifiers
  • Administrative boundaries matched to reporting hierarchies and census geographies
  • Population denominators aligned with case periods and geographic units
  • Metadata records capturing provenance, restrictions, transformations and quality concerns
  • Unique identifiers used to prevent duplicate case and facility records

Participants can clean and validate health records before mapping or statistical analysis.

  • Completeness checks for onset dates, addresses, outcomes and demographic fields
  • Range, format and logic tests applied to surveillance line lists
  • Duplicate detection using deterministic matching and probabilistic record linkage
  • Missing-location patterns assessed before excluding or imputing records
  • Outlier review separates data-entry errors from plausible epidemiological events
  • Audit trails record corrections, exclusions and unresolved data-quality issues

Participants can geocode health records and document positional accuracy for intended map use.

  • Address standardisation improves match rates before batch geocoding runs
  • Geocoding match scores reviewed against locally defined acceptance thresholds
  • Manual location correction uses gazetteers, imagery and administrative references
  • Coordinate reference systems selected for distance, area and local mapping
  • Positional accuracy categories stored alongside geocoded case records
  • Residence, exposure and diagnosis locations distinguished within outbreak datasets

Participants can design clear map products matched to operational and analytical audiences.

  • Visual hierarchy directs attention to cases, boundaries and intervention sites
  • Choropleth maps use rates rather than raw case counts
  • Proportional symbols communicate event magnitude without obscuring nearby locations
  • Sequential and diverging colour schemes match data measurement scales
  • Classification methods compared using equal interval, quantile and Jenks breaks
  • Map layouts include source notes, dates, denominators and uncertainty statements

Participants can calculate and map disease frequency measures using appropriate denominators.

  • Incidence, prevalence, attack rate and mortality rate calculated correctly
  • Person-time denominators used when populations change during observation periods
  • Crude rates compared only after checking population composition differences
  • Small-area rates stabilised through suppression rules and minimum-count thresholds
  • Rate multipliers selected for interpretable reporting of uncommon conditions
  • Denominator source dates aligned with surveillance reporting periods

Participants can produce comparable geographic rates using age standardisation and rate ratios.

  • Age-specific rates calculated from stratified case and population data
  • Direct standardisation applies a shared standard population distribution
  • Indirect standardisation produces standardised mortality and morbidity ratios
  • Confidence intervals distinguish random variation from meaningful geographic differences
  • Funnel plots identify areas requiring further epidemiological investigation
  • Rate ratios communicate relative burden against selected reference areas

Participants can examine disease patterns across time and geography for outbreak interpretation.

  • Epidemic curves constructed using onset date and reporting date
  • Weekly aggregation balances signal detection against unstable small counts
  • Moving averages smooth reporting artefacts in routine surveillance series
  • Time-enabled maps reveal spread, persistence and reporting delays
  • Seasonal baselines distinguish expected variation from unusual disease activity
  • Nowcasting assumptions documented when recent reports remain incomplete

Participants can test spatial patterning and interpret cluster results within epidemiological context.

  • Global Moran's I tests overall spatial autocorrelation among area rates
  • Local Moran's I identifies high-high and low-low spatial associations
  • Getis-Ord Gi* identifies statistically significant hotspot and coldspot areas
  • Spatial weights matrices defined by contiguity, distance or nearest neighbours
  • Multiple-testing concerns considered when interpreting local cluster statistics
  • Cluster outputs checked against data quality, denominators and reporting practices

Participants can analyse case locations in relation to potential exposures and population distribution.

  • Kernel density estimation summarises concentrated point-event patterns
  • Buffer analysis identifies cases near suspected exposure locations
  • Spatial joins count cases within facilities, catchments and administrative areas
  • Case-control location comparisons test plausible environmental exposure hypotheses
  • Population-at-risk surfaces prevent misleading interpretation of case density
  • Confidential point locations protected through aggregation and spatial masking

Participants can assess geographic access to services and identify underserved populations.

  • Network analysis estimates travel distance and travel time to facilities
  • Service areas model population coverage within defined travel-time thresholds
  • Facility catchments assigned through nearest-provider and capacity assumptions
  • Barriers such as rivers, checkpoints and seasonal roads incorporated
  • Two-step floating catchment area methods compare supply and demand
  • Access maps distinguish physical proximity from actual service availability

Participants can identify geographic priorities for vaccination, testing and outreach operations.

  • Coverage rates mapped using eligible populations and verified doses
  • Dropout analysis compares first-dose and final-dose geographic patterns
  • Priority scoring combines disease burden, access barriers and vulnerability
  • Location-allocation methods identify candidate sites for temporary services
  • Microplanning maps assign outreach teams, target populations and service points
  • Intervention boundaries documented to support post-campaign evaluation

Participants can integrate equity indicators into geographic public-health priority setting.

  • Social determinants selected through a transparent conceptual framework
  • Composite indices constructed with documented indicators, weights and limitations
  • Deprivation, disability and language data interpreted without stigmatising communities
  • Equity stratifiers compare access and outcomes across population groups
  • Bivariate maps reveal overlap between disease burden and social disadvantage
  • Community knowledge incorporated alongside administrative and survey data

Participants can use environmental spatial data to support disease-risk and exposure assessments.

  • Land surface temperature derived from satellite imagery for heat-risk mapping
  • Rainfall and vegetation indices examined for vector-borne disease surveillance
  • Air-quality surfaces linked with respiratory health indicators and population exposure
  • Raster resolution assessed against the scale of health decisions
  • Zonal statistics summarise environmental conditions within reporting areas
  • Environmental proxies interpreted cautiously alongside field and clinical evidence

Participants can apply governance and privacy safeguards to public-health GIS workflows.

  • Purpose limitation defines permitted uses of identifiable health data
  • Role-based access controls restrict sensitive datasets and map layers
  • Minimum necessary data principles guide field and analytical extracts
  • Small-number suppression prevents indirect identification in published maps
  • Spatial masking methods reduce re-identification risk for point locations
  • Data-sharing agreements specify retention, security, ownership and destruction requirements

Participants can identify and communicate limitations that affect geographic health conclusions.

  • Underreporting, diagnostic access and testing policy distort observed disease patterns
  • Modifiable areal unit problems affect aggregation and geographic comparisons
  • Ecological fallacy avoided when interpreting area-level associations
  • Geocoding error assessed for its effect on proximity analyses
  • Sensitivity analysis tests alternative thresholds, boundaries and assumptions
  • Uncertainty statements distinguish observed findings from causal claims

Participants can specify GIS reporting products for routine surveillance and incident coordination.

  • Key performance indicators selected for surveillance, access and intervention monitoring
  • Dashboard wireframes separate executive, operational and analytical user needs
  • Refresh schedules match reporting cadence and data-quality assurance capacity
  • Situation report maps communicate changes, priorities and confidence limitations
  • Alert thresholds link surveillance indicators to predefined response actions
  • Version control preserves traceability across rapidly updated incident products

Participants can design repeatable GIS workflows that reduce manual processing errors.

  • Workflow diagrams identify inputs, transformations, outputs and quality checks
  • ModelBuilder and QGIS processing models automate repeatable geoprocessing tasks
  • Parameterised scripts separate reusable logic from incident-specific settings
  • Scheduled data updates include validation gates before map publication
  • File naming conventions support reproducibility, review and archival retrieval
  • Peer review checklists catch analytical and cartographic errors before release

Participants can present GIS findings as focused operational recommendations for decision-makers.

  • Decision briefings open with the operational question and key finding
  • Annotated maps connect geographic evidence with recommended response actions
  • Absolute burden and relative risk presented without misleading comparisons
  • Counterfactual explanations test whether patterns support proposed interventions
  • Technical methods documented separately from executive decision summaries
  • Stakeholder questions anticipated on data quality, equity and feasibility

Participants can build, review and present a complete outbreak GIS analysis with prioritised response recommendations.

  • Outbreak scenario requirements translated into an analysis and reporting plan
  • Surveillance, population, facility and vulnerability datasets prepared for integration
  • Rates, clusters and service-access findings produced using documented methods
  • Priority intervention areas selected through transparent epidemiological criteria
  • Privacy, uncertainty and equity checks completed before product review
  • Peer review tests maps, assumptions, recommendations and presentation clarity
  • Final briefing presents findings, limitations and accountable response actions

Exercises and examples are adapted to each cohort's sectors and roles.

What you take back to work

  1. Public-health GIS data specification template
  2. Geocoding and location-validation checklist
  3. Disease-rate and age-standardisation workbook
  4. Outbreak map-production checklist
  5. Spatial hotspot interpretation guide
  6. Outbreak GIS response briefing pack

Who should attend

  • Public Health Analyst — needs defensible geographic evidence for surveillance and intervention planning
  • Epidemiologist — needs spatial methods for interpreting disease patterns and outbreak signals
  • Health Information Manager — manages routine reporting data requiring location validation and mapping
  • Emergency Preparedness Officer — allocates field teams, supplies and services during health incidents
  • Health Programme Manager — targets vaccination, maternal health or disease-control resources geographically
  • Humanitarian Health Coordinator — assesses service access and population risk during emergencies

Skills and tools covered

Health data geocodingDisease mappingSpatial epidemiologyAccess analysisHotspot detectionGIS data governance

Tools and standards

QGIS, ArcGIS Pro, R, DHIS2

How the course runs

Training methodology

The course uses short technical briefings followed by instructor demonstrations, public-health case work and supervised analysis. Participants work with realistic line lists, population denominators, facility records and community indicators to build maps and interpret results. Small-group sessions test competing explanations for observed clusters and translate findings into response priorities. Simulations mirror incident briefings, including rapid updates, incomplete data and conflicting stakeholder requests. Each participant develops an application plan and receives structured feedback on the final GIS analysis.

Requirements and prerequisites

Participants should understand basic public-health concepts such as cases, populations at risk, incidence, prevalence and routine surveillance data. Experience using spreadsheets to clean, filter and calculate data is expected. Prior work with health-service, census, laboratory or programme-monitoring datasets is useful. Participants should be comfortable interpreting tables and simple charts. Previous GIS experience is helpful but not essential; the course introduces the required mapping workflow before moving to advanced analysis. Coding, advanced statistics and prior use of ArcGIS Pro, QGIS or R are not required.

A typical training day

08:30 – 10:30First session
10:30 – 10:45Refreshment break
10:45 – 12:30Second session
12:30 – 13:30Lunch and networking
13:30 – 15:00Third session
15:00 – 15:15Refreshment break
15:15 – 16:30Workshop and daily review

Live online deliveries follow the same structure in East Africa Time, with shorter screen blocks and longer breaks.

What the fee includes

  • Instruction by a practitioner facilitator
  • Full course workbook and materials
  • Exercise files, templates and case studies
  • Refreshments and lunch on classroom deliveries
  • Certificate of completion
  • Post-course application plan

Frequently asked questions

You should understand basic public-health measures and be comfortable working with spreadsheets. Prior GIS, coding and advanced statistical experience are not required, although existing GIS users will be able to extend their methods.

Bring a laptop suitable for GIS software, with administrator access where possible. If your organisation permits it, bring a non-sensitive example of a health-data workflow or map request you want to improve.

The course is designed for public-health analysts, epidemiologists, health information staff, programme managers and emergency-response personnel. It also suits humanitarian health teams responsible for service access, disease surveillance or intervention targeting.

General GIS courses concentrate on mapping functions, while epidemiology courses may not address spatial data processing and cartography. This course joins epidemiological measures, spatial statistics, access analysis, privacy controls and operational health reporting.

Participants can apply the methods to routine surveillance maps, vaccination microplans, facility-access assessments and outbreak situation reports. The reusable templates support consistent data preparation, quality review and presentation of findings.

Each day runs from 08:30 to 16:30 and provides about 6.5 contact hours. The first week establishes data, mapping, rates and spatial-analysis methods; the second week develops access, equity, governance, reporting and the final capstone briefing.

Questions about this course?

Ask about dates, fees, group bookings or running it for your team. Our training team replies by email.